PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04462.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 232aa    MW: 26776.1 Da    PI: 10.0562
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04462.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.32.4e-091439126
                      NAM  1 lppGfrFhPtdeelvveyLkkkvegk 26
                             lppGfrF+Ptdeelvv+yLk+ +e++
  Sme2.5_04462.1_g00003.1 14 LPPGFRFRPTDEELVVQYLKRDMEQE 39
                             79*******************99876 PP

2NAM96.54.2e-303711255128
                      NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              e+e yfFs+r+ ky++g+r+nratksgyWkatg dk+++ +  +++lvglkktLvfy+g++p+g +t+W+mheyrl
  Sme2.5_04462.1_g00003.1  37 EQEKYFFSTREVKYPNGNRSNRATKSGYWKATGIDKQIILRgqQQQLVGLKKTLVFYRGKSPQGCRTNWIMHEYRL 112
                              5789***********************************99666667***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.0971134IPR003441NAC domain
SuperFamilySSF1019413.66E-4510134IPR003441NAC domain
PfamPF023651.6E-2515112IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEKVNFMKNG VLRLPPGFRF RPTDEELVVQ YLKRDMEQEK YFFSTREVKY PNGNRSNRAT  60
KSGYWKATGI DKQIILRGQQ QQLVGLKKTL VFYRGKSPQG CRTNWIMHEY RLANTESNNH  120
PIQGNWVICR IFLKRRGSIK NKEETMTTHD ESPLVLSKIC CRDRKTSNKE LQAENTRIIF  180
YDFMGESNSN GGAASSSSSG ITDLTTTVNG ESDDHEESTS SFNSFTTFRR KN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-411214015171NO APICAL MERISTEM PROTEIN
1ut4_B8e-411214015171NO APICAL MERISTEM PROTEIN
1ut7_A8e-411214015171NO APICAL MERISTEM PROTEIN
1ut7_B8e-411214015171NO APICAL MERISTEM PROTEIN
4dul_A8e-411214015171NAC domain-containing protein 19
4dul_B8e-411214015171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ755241e-105Z75524.1 L.esculentum partial mRNA (clone SENU5).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366089.11e-123PREDICTED: NAC domain-containing protein 83
SwissprotQ9FY933e-63NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0V0HKA71e-123A0A0V0HKA7_SOLCH; Putative NAC transcription factor 29-like
STRINGPGSC0003DMT4000310451e-122(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-63NAC domain containing protein 83